{ config, pkgs, inputs, my-r,... }:
let
  nvim-config-store = builtins.filterSource (path: type: baseNameOf path != "default.nix") ./.;
  nvim-config-files = builtins.attrNames (builtins.readDir nvim-config-store);
  nvim-config-lis = map (path: builtins.readFile "${nvim-config-store}/${path}") (nvim-config-files);
  nvim-config = builtins.concatStringsSep "\n" nvim-config-lis;

in
{
  programs.neovim = {
    enable = true;
    defaultEditor = true;

    plugins = with pkgs.vimPlugins; [
      nvim-treesitter.withAllGrammars
      nvim-lspconfig
      telescope-nvim
      nvim-cmp
      cmp-nvim-lsp
      nvim-tree-lua
      which-key-nvim
      trouble-nvim
      kanagawa-nvim
      lazygit-nvim
      quarto-nvim
      otter-nvim
      otter-nvim
      image-nvim
      molten-nvim
      toggleterm-nvim
      markdown-preview-nvim
      lualine-nvim
      gitsigns-nvim
      indent-blankline-nvim
      guess-indent-nvim
      nvim-autopairs
      catppuccin-nvim
    ];

    extraLuaConfig = nvim-config;


    extraPackages = with pkgs; [
      #quarto
      pyright
      ripgrep
      lua-language-server
      rust-analyzer
      lazygit
      tectonic
      imagemagick
      jupyter
      pnglatex
      nil
      nixfmt

      rustc
      cargo
      rustfmt
      clippy
      rust-analyzer
    ];

    extraLuaPackages = p: with p; [
      magick
    ];

    
    extraPython3Packages = ps: with ps; [
      pynvim
      jupyter-client
      cairosvg
      pnglatex
      plotly
      pyperclip
      ipython
      nbformat
    ];



  };

  xdg.dataFile."jupyter/kernels/ir-nix/kernel.json".text = ''
    {
      "argv": [
        "${my-r.env}/bin/R",
        "--slave",
        "-e",
        "IRkernel::main()",
        "--args",
        "{connection_file}"
      ],
      "display_name": "R (nix)",
      "language": "R"
    }
  '';

  home.file.".Rprofile".text = ''
graphics::par(bg = "white")
options(
  jupyter.rich_display      = TRUE,
  #jupyter.display_mimetypes = c("text/plain", "image/png", "text/latex"),
  jupyter.display_mimetypes = c("text/plain", "image/png"),
  jupyter.plot_mimetypes    = "image/png"
)
 '';

  #sessionVariables = {
  #  EDITOR = "nvim";
  #  VISUAL = "nvim";
  #};
}